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Table 4 Top 10 of the uniquely represented proteins from S. bicolor genotypes at steady-state and upon C. partellus infestation

From: Label-free quantitative proteomics of Sorghum bicolor reveals the proteins strengthening plant defense against insect pest Chilo partellus

Key Protein Accession No. Protein Name Function
A - S. bicolor ICSV700 infested by C. partellus
 23,819 C5Y853 similar to ATP synthase CF1 alpha subunit Chloroplastic, correlation with spiny-ness
 1056 C5WWL7 similar to Beta-caryophyllene synthase Indirect defense against Lepidoptera by attracting predators
 38 C5YUK3 Flap endonuclease 1-A Catalysis of the cleavage of a 5′ flap structure in DNA, but not other DNA structures; processes the 5′ ends of Okazaki fragments in lagging strand DNA synthesis, Acts as a genome stabilization factor
 107 A1E9R4 DNA-directed RNA polymerase subunit beta DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates, Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n + 1)
 9314 C5X5B2 similar to ADP-ribosylation factor GTPase-activating protein AGD3 Binds to and increases the activity of a GTPase, plasma membrane remodeling
 19,695 C5Y746 similar to disease resistance RPP13-like protein 3 isoform X3 Disease resistance against pathogens
 28,942 C5YHK1 similar to Ankyrin repeat domain-containing protein 2 Chloroplast targeting sequence binding
 1890 C5XAM0 similar to ubiquitin-like Protein turnover
 20,222 C5X7K7 similar to RNA polymerase beta subunit RNA polymerization
 4393 C5YLQ0 Adenylyl cyclase-associated protein Cyclase-associated protein 1-like, cytoskeleton organization, response to pathogen
B - S. bicolor ICSV700 at steady state
 3162 C5YWC5 similar to Proliferation-associated protein 2G4 Change in state or activity of a cell or an organism as a result of a cytokinin stimulus
 28,629 C5Z4X4 similar to reverse transcriptase, Brassinosteroid insensitive-1 like Plant architecture
 7943 C5XJ50 similar to Retrotransposon protein Probable member of endonuclease, exonuclease, phosphatase family
 13,397 C5WSY0 similar to Arginine decarboxylase Drought tolerance, defense
 27,809 C5XAT9 Histone H2A DNA binding, chromatin silencing
 2862 C5XTG6 Nitrate reductase Cell signaling & survival under stress
 11,807 C5WU06 similar to FACT complex subunit SPT16 Histone binding and remodeling outside the context of DNA replication
 25,101 C5X957 Ribosomal protein L15 Structural constituent of ribosome, Cytoplasmic translation
 14,173 C5WQ44 similar to enolase Phosphopyruvate hydratase activity
 16,161 C5YDV5 similar to putative quinone oxidoreductase Oxidoreductase activity, chloroplastic
C - S. bicolor IS2205 infested by C. partellus
 29,614 C5YIU1 similar to Monogalactosyldiacyl glycerol synthase 2 Thylakoid membrane biogenesis under stress
 13,788 C5YMZ5 similar to Zinc finger CCCH domain-containing protein 55-like ABA biosynthesis, drought, post-transcriptional regulation of gene expression
 9243 C5WNH3 similar to ATP binding protein Protein kinase activity, Serine/Threonine protein kinase STY46 like
 5008 C5YGI4 similar to thiazole synthase ADP binding, Cell wall integrity, and stress response component 1-like
 25,363 C5YJ73 similar to Ubiquitin and WLM domain-containing protein Ubiquitin and WLM domain-containing metalloprotease
 5014 C5XXC0 similar to Protein kinase domain-containing protein Triggered in response to the presence of a foreign body or the occurrence of an injury, Introducing a phosphate group on to a protein, ATP binding, Cysteine-rich receptor-like protein kinase 26
 702 C5X8K4 similar to disease-resistant protein RPP-13 like 1 Disease resistance protein against pathogen
 17,789 C5Z5B4 similar to 26S protease regulatory subunit 6A-like protein ATP binding, Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs), 26S protease regulatory subunit 6A homolog
 19,253 C5YVH3 60S acidic ribosomal protein P0 Ribosomal subunit rRNA binding, Cytoplasmic translation
 21,882 C6JSV0 similar to Chitinase Catalysis of the hydrolysis of (1- > 4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins
D - S. bicolor IS2205 at steady state
 28,234 C5Y227 similar to Indole-3-acetic acid-amido synthetase GH3.3 Synthesis of IAA-conjugates, a mechanism to cope up with excess auxin
 22,121 C5X8X8 similar to AT-hook motif-containing protein, Helicase NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix, Process of restoring DNA after damage, Telomere maintenance, ATP-dependent DNA helicase PIF1-like
 125 C5XNN6 Thiamine thiazole synthase 1, chloroplastic Involved in the biosynthesis of the thiamine precursor thiazole, Suicide enzyme, Additional roles in adaptation to various stress conditions and DNA damage tolerance
 6474 C5WWV5 similar to Inactive ubiquitin carboxyl-terminal hydrolase 53 Thiol-dependent ubiquitinyl hydrolase activity, protein deubiquitination, inactive ubiquitin carboxyl-terminal hydrolase 53
 16,964 C5YS29 similar to Diaminopimelate decarboxylase Diaminopimelate decarboxylase activity, meso-2,6-diaminopimelate + H(+) = L-lysine + CO(2), systemic acquires resistance
 31,822 C5XSW5 Glutaredoxin-like protein Photooxidative stress, antioxidant activity
 19,098 C5Z949 similar to RING zinc finger domain superfamily protein Ubiquitin specific protease binding, ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1
 2715 C5XIX0 similar to NEFA-interacting nuclear protein NIP30 Protein FAM192A isoform X1
 23,386 C5Y1Y1 Peroxidase 2 phenolic donor + H2O2 = 2 phenoxyl radical of the donor + 2 H2O
 29,401 C5Z7K8 Pyruvate dehydrogenase E1 component subunit alpha Catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2
E - S. bicolor Swarna infested by C. partellus
 2587 C5XAW9 Serine/threonine-protein kinase ATP + a protein = ADP + a phosphoprotein, reactions triggered in prevention/recovery from the infection caused by the attack
 21,100 C5XLE9 similar to Photosystem II CP47 reaction center protein Chlorophyll-binding, Photosynthetic ETS, Similar to Photosystem II CP47 chlorophyll apoprotein
 21,351 C5XXY1 similar to Serine-threonine kinase receptor-associated protein Involved in defense
 13,794 C5YV23 similar to Adenylate isopentenyl transferase-like Cytokinin biosynthesis
 23,585 C5WW05 similar to Triacylglycerol lipase SDP1 Hydrolase activity, Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate, membrane protein homeostasis
 17,550 C5YTB0 similar to Inosine-5′-monophosphate dehydrogenase, Kinesin-like protein Serine/Threonine Kinase activity
 6258 C5YWV3 similar to UDP-D-glucuronate decarboxylase  
 349 C5XT35 NADP-dependent D-sorbitol-6-phosphate dehydrogenase Oxidoreductase activity, sorbitol metabolism, development
 28,758 C5Y3U1 similar to BOI-related E3 ubiquitin-protein ligase 1 Abiotic stress tolerance, protein turnover
 13,628 C5YHS5 similar to 5′-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 Catalytic activity, nucleoside metabolic process
F - S. bicolor Swarna at steady state
 17,459 C5WPC8 similar to MAR-binding protein The nuclear envelope protein, development
 18,191 C5Y2G1 similar to Filamin B like protein Connects cell membrane constituents to actin filaments
 23,144 C5X4Q7 Histone H2B DNA binding, Nucleosome assembly
 30,485 C5XZI6 similar to B-cell receptor-associated protein 31-like containing protein ER to Golgi vesicle-mediated transport, Intracellular protein transport, B cell receptor-associated protein 31
 4299 C5YXD6 similar to Retrotransposon protein Nucleic acid-binding, zinc ion binding, bZIP like protein
 16,841 C5YBM1 Carboxypeptidase Serine-type carboxypeptidase activity
 7517 C5Z7H3 similar to Putative pentatricopeptide repeat-containing protein Zinc ion binding, RNA binding, splicing
 14,188 C5X6D0 Lon protease homolog, mitochondrial ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix, protein homeostasis
 21,520 C5XXE4 Similar to the nuclear mitotic apparatus protein 1 Mitosis
 2898 C5Y2Y9 similar to Clathrin heavy chain 1 Present in a coat of vesicles
  1. Many proteins were found to be uniquely accumulated in specific genotypes and treatments. The top 10 of these unique proteins were selected based on their intensity values obtained from the in solution proteomics. The table provides the details of the proteins and their functional significance
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Proteome Science

ISSN: 1477-5956

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